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BEAGLE
is a new alignment tool exploiting a new encoding for RNA secondary structure and a substitution matrix of RNA structural elements to perform global and local alignments.
Max 10 000 alignments allowed
1) Select Analysis Type
One set
Two sets
Search
Description
:
It processes all sequences in one starting set
Load an example:
One Set
-
Two sets
-
Search
Clear All
2) Input
Enter or paste the QUERY set of RNA sequences in a
supported format
:
Enter or paste the TARGET set of RNA sequences in a
supported format
:
3) Parameters
Reference Set:
Structured Rfam
3UTR - HomoSapiens
3UTR - Mus Musculus
lncRNA - Homo Sapiens
lncRNA - Mus Musculus
GAP INSERTION
SEQUENCE BONUS
GAP EXTENSION
GLOBAL/LOCAL
Global
Local
COMPARISON METHOD
All Vs. All
One to One